Deoxyribonuclease I-Like 3

Alternative Names

  • DNASE1L3
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OMIM Number

602244

Gene Map Locus
3p14.3

Description

The DNASE1L3 gene encodes a protein that belongs to the Deoxyribonuclease I family.  The protein functions as an endonuclease capable of cleaving both double and single stranded DNA.  It plays a key role during apoptosis as it mediates the breakdown of DNA.

Defects in the DNASE1L3 gene can have strong pathological consequences.  When DNA, released from apoptotic cells, is not efficiently cleared, it accumulates and eventually triggers an auto-immune response.  Mutations in the DNASE1L3 gene have thus been associated with Systemic Lupus Erythematosus 16 (SLEB16), an autosomal recessive, pediatric-onset, auto-immune disorder.  This condition is characterized by the formation of anti-DNA antibodies and symptoms such as inflammation, fatigue, fever and joint pain. 

Molecular Genetics

Located at position 3p14.3, the DNASE1L3 gene spans a length of 22 kb and contains eight exons.  The protein encoded by this gene consists of 305 amino acids and has a mass of about 35 kDa.  Alternative splicing of transcript variants has resulted in multiple isoforms of the DNASE1L3 protein.  The gene is found to be highly expressed in the liver and spleen.  So far only a single mutation, a homozygous 1 bp deletion (c.643delT), shown to result in the loss of DNase activity, has been associated with SLEB16.

Epidemiology in the Arab World

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Other Reports

Saudi Arabia

Al-Mayouf et al. (2011) aimed to identify an autosomal recessive form of SLE.  To do so, they recruited subjects with healthy consanguineous parents and at least two affected siblings.  Seven such families were recruited to the study.  All patients had a pediatric onset of the disorder, a high frequency of anti-neutrophil cytoplasmic antibodies and lupus nephritis.  Autozygome analysis and linkage analysis helped identify overlapping autozygous intervals on chromosome 3p14.3 (lod score 6.6) in six of the families.  As DNASE1L3 was a promising gene in this region, it was sequenced and a homozygous 1-bp deletion c.643delT (p.Trp215GlyfsX2) was discovered.  The deletion was found in all affected members of the six families and haplotype analysis confirmed it to be a founder mutation.  Exome sequencing on two patients did not find any coding variants of functional consequence, thus ruling out the possibility of the mutation being a mere ‘tag’ on the ancestral haplotype block.  The mutation was not found in 192 ethnically-matched controls, the 1000 Genomes Project or the Exome Variant Server and was predicted to be pathogenic.  Lymphoblast cell lines created from two of the patients had no detectable DNASE1L3 transcript, presumably due to nonsense mediated decay.  Also, a nicking assay showed that the protein encoded by the mutant DNASE1L3 lacked DNase activity.  A total of 85 patients with sporadic SLE were also genotyped and one individual was found to be homozygous for an R206C substitution.  While this mutation has been shown experimentally to abolish DNase activity, larger studies are required to confirm this link.

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