Transcription Factor 4

Alternative Names

  • TCF4
  • Immunoglobulin transcription Factor
  • ITF2
  • SEF2-1B
  • SEF2
  • E2-2

Associated Diseases

Pitt-Hopkins Syndrome
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OMIM Number

602272

NCBI Gene ID

6925

Uniprot ID

P15884

Length

442,603 bases

No. of Exons

34

No. of isoforms

16

Protein Name

Transcription factor 4

Molecular Mass

71308 Da

Amino Acid Count

667

Genomic Location

chr18:55,222,185-55,664,787

Gene Map Locus
18q21.2

Description

This gene encodes transcription factor 4, a basic helix-loop-helix transcription factor. The encoded protein recognizes an Ephrussi-box ('E-box') binding site ('CANNTG') - a motif first identified in immunoglobulin enhancers. This gene is broadly expressed, and may play an important role in nervous system development. Defects in this gene are a cause of Pitt-Hopkins syndrome. In addition, an intronic CTG repeat normally numbering 10-37 repeat units can expand to >50 repeat units and cause Fuchs endothelial corneal dystrophy. Multiple alternatively spliced transcript variants that encode different proteins have been described. [From RefSeq]

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_001083962.1:c.947delUnited Arab EmiratesNC_000018.10:g.55261510delLikely PathogenicPitt-Hopkins SyndromeNG_011716.1:g.332121del; NM_001083962.1:c.947del; NP_001077431.1:p.Gly316AlafsTer75

Other Reports

Lebanon

Inati et al (2012) described a male patient with features consistent with that of Pitt-Hopkins Syndrome, and a deletion in the 18q21.2 locus. qRTPCR confirmed haploinsufficiency of TCF4. 

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