Collagen, Type IV, Alpha-4

Alternative Names

  • COL4A4
  • Collagen Of Basement Membrane, Alpha-4 Chain
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OMIM Number

120131

NCBI Gene ID

1286

Uniprot ID

P53420

Length

197,028 bases

No. of Exons

54

No. of isoforms

1

Protein Name

Collagen alpha-4(IV) chain

Molecular Mass

164038 Da

Amino Acid Count

1690

Genomic Location

chr2:226,967,532-227,164,559

Gene Map Locus
2q36.3

Description

This gene encodes one of the six subunits of type IV collagen, the major structural component of basement membranes. This particular collagen IV subunit, however, is only found in a subset of basement membranes. Like the other members of the type IV collagen gene family, this gene is organized in a head-to-head conformation with another type IV collagen gene so that each gene pair shares a common promoter. Mutations in this gene are associated with type II autosomal recessive Alport syndrome (hereditary glomerulonephropathy) and with familial benign hematuria (thin basement membrane disease). Two transcripts, differing only in their transcription start sites, have been identified for this gene and, as is common for collagen genes, multiple polyadenylation sites are found in the 3' UTR. [From RefSeq]

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_000092.4:c.1802delCLebanonchr2:227080444PathogenicAlport Syndrome 2, Autosomal RecessiveNG_011592.1:g.89116delC; NM_000092.4:c.1802delC; NP_000083.3:p.Pro601Glnfs
NM_000092.4:c.2420delSaudi Arabia12:227057565PathogenicPathogenicIgA Nephropathy, Susceptibility to, 2NG_011592.1:g.111996del; NM_000092.4:c.2420del; NP_000083.3:p.Gly807ValfsTer62786205640191313
NM_000092.5:c.2555G>ALebanon12:227056106PathogenicIgA Nephropathy, Susceptibility to, 2NG_011592.1:g.113454G>A; NM_000092.5:c.2555G>A; NP_000083.3:p.Gly852Arg
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