Podocin

Alternative Names

  • NPHS2
  • PDCN

Associated Diseases

Nephrotic Syndrome, Type 2
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OMIM Number

604766

NCBI Gene ID

7827

Uniprot ID

Q9NP85

Length

25,449 bases

No. of Exons

8

No. of isoforms

2

Protein Name

Podocin

Molecular Mass

42201 Da

Amino Acid Count

383

Genomic Location

chr1:179,550,539-179,575,987

Gene Map Locus
1q25.2

Description

Podocin is an important molecule, encoded by NPHS2 and mapped to 1q25.2 chromosome. It is an integral membrane protein made of 383 amino acids and is exclusively expressed in glomerular podocytes. Podocin is essential in the regulation of glomerular permeability, and acts as a linker between the plasma membrane and the cytoskeleton. It has been identified that defects in this protein are the cause of steroid-resistant nephrotic syndrome (SRNS); an autosomal recessive and early onset disease with severe proteinuria, low serum albumin and possible edemas.

Molecular Genetics

The NPHS2 gene consists of eight coding exons and spans approximately 25 kb. Mutations in this gene are the major cause of steroid-resistant nephrotic syndrome (SRNS), accounting for up to 30% of sporadic and 20-40% of familial cases.

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_014625.4:c.538G>ALebanonchr1:179557227PathogenicLikely PathogenicNephrotic Syndrome, Type 2NG_007535.1:g.23723G>A; NM_014625.4:c.538G>A; NP_055440.1:p.Val180Met743153475368
NM_014625.4:c.779T>AOman; United Arab Emir...NC_000001.11:g.179554491A>TPathogenic, Uncertain SignificancePathogenicNephrotic Syndrome, Type 2NG_007535.1:g.26459T>A; NM_014625.4:c.779T>A; NP_055440.1:p.Val260Glu775006954447882

Other Reports

Egypt

Bakr et al. (2008) studied the spectrum of NPHS2 mutations in 16 Egyptian children with non familial steroid-resistant nephrotic syndrome (SRNS). NPHS2 mutations were evident in four patients (25%) who were bearing four novel mutations including two frame shift mutations (p.R238fs and p.P45fs) and two missense mutations (p.I136L and p.F216Y).

Oman

Al-Gazali and Ali (2010), reported three Omani families living in the United Arab Emirates with congenital nephrosis. A homozygous missense mutation (c.779T4A) in the NPHS2 gene was identified in two affected families, which resulted in a valine to glutamic acid (p.V260E) substitution. 

[Al-Gazali L, Ali BR. Mutations of a country: a mutation review of single gene disorders in the United Arab Emirates (UAE). Hum Mutat. 2010; 31(5):505-20.]

Tunisia

Mbarek et al. (2011) analyzed 24 children belonging to 13 families with SRNS manifesting with various ages of onset for mutations in the NPHS1, NPHS2, PLCE1, LAMB2, and the relevant exons 8 and 9 of the WT1 genes. They found the novel p.E371fsX16 mutation in the NPHS2 gene in a single family. Nine of 24 patients failed to be categorized by mutational analysis.

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