Cytochrome P450, Subfamily XXVIIB, Polypeptide 1

Alternative Names

  • CYP27B1
  • 25-Hydroxyvitamin D3-1-Alpha-Hydroxylase
  • 1-Alpha-Hydroxylase
  • P450C1-Alpha
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OMIM Number

609506

Gene Map Locus
12q14.1

Description

The CYP27B1 gene encodes a member of the cytochrome P450 superfamily of enzymes.  The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids.  The protein encoded by this gene localizes to the inner mitochondrial membrane where it hydroxylates 25-hydroxyvitamin D3 at the 1alpha position.  This reaction synthesizes 1alpha,25-dihydroxyvitamin D3, the active form of vitamin D3, which binds to the vitamin D receptor and regulates calcium metabolism.  Thus, this enzyme regulates the level of biologically active vitamin D and plays an important role in calcium homeostasis.  Mutations in this gene can result in vitamin D-dependent rickets type I.

Molecular Genetics

VDDR-IA is caused by an enzymatic defect in synthesis of the active form of vitamin D due to mutation in the CYP27B1 gene.  The CYP27B1 gene encodes 1 α-hydroxylase and maps to chromosome 12q14.1.  It spans approximately 5kb on the long arm of chromosome 12, and is composed of nine exons and eight introns.  The CYP27B1 protein is made up of 508 amino acids.  Homology modeling has predicted the presence of 17 helices. 

Several missense mutations in this gene have been reported in patients from various ethnicities and some of these mutations are ethno-specific. 

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NC_000012.12:g.[57764205=;57768302=] NC_000020.11:g.[54164712=;54125940=]United Arab EmiratesNC_000012.12:g.[57764205=;57768302=] NC_000020.11:g.[54164712=;54125940T=]ProtectiveVitamin D Hydroxylation-Deficient Rickets, Type 1ANC_000012.12:g.[57764205=;57768302=] NC_000020.11:g.[54164712=;54125940=]2762939 6013897 10877012 4646536
NC_000012.12:g.[57764205A>G;57768302G>T] NC_000020.11:g.[54164712=;54125940=]United Arab EmiratesNC_000012.12:g.[57764205A>G;57768302G>T] NC_000020.11:g.[54164712=;54125940=]Risk factorVitamin D Hydroxylation-Deficient Rickets, Type 1A2762939 6013897 10877012 4646536
NC_000012.12:g.57768302=United Arab EmiratesNC_000012.12:g.57768302=Risk factorVitamin D Hydroxylation-Deficient Rickets, Type 1A10877012
NM_000785.4:c.1137-29=United Arab EmiratesNC_000012.12:g.57764205=Risk factorVitamin D Hydroxylation-Deficient Rickets, Type 1ANG_007076.1:g.7989=; NM_000785.4:c.1137-29=; NP_000776.1:p.?4646536

Other Reports

Morocco

Kim et al. (2007) described a Moroccan patient with 1-Alpha-Hydroxylase Deficiency born to unrelated parents.  DNA analysis identified a novel homozygous deletion mutation in exon 9 of the CYP27B1 gene in the patient.  This 3922delA mutation was predicted to cause a frameshift that bypassed the termination signal and permitting translation into the 3’ UTR of the gene.  Both parents were found to be heterozygous carriers of this mutation.

Saudi Arabia

AlZahrani et al. (2010) described a large Saudi Arabian family with four siblings affected with VDDR-I in whom they identified a novel biallelic missense (c.305G>A; p.G102E) mutation in exon 2 of the CYP27B1 gene.  This polymorphism was not found in 100 healthy Saudi control samples.  Multiple protein sequence alignment showed that the Glycine in this position was fairly conserved across species.  Functional studies confirmed the pathogenicity of this variant, with the mutant protein losing 80% of its enzymatic activity in cell-line experiments.  

Babiker et al. (2014) studied the CYP27B1 gene in a Saudi family with a 13-month old girl with VDDR-1.  Initial gene analysis for the common mutations in exons 2 and 8 did not reveal any positive results.  Whole exome sequencing, however, revealed the presence of a homozygous mutation in the CYP27B1 gene in the patient.  This c.1510C>T (p.Q504X) mutation introduced a premature stop codon, and was thought to be pathogenic in nature.

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