Collagen, Type IV, Alpha-1

Alternative Names

  • COL4A1
  • Collagen of Basement Membrane, Alpha-1 Chain
  • Arresten
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OMIM Number

120130

NCBI Gene ID

1282

Uniprot ID

P02462

Length

158,195 bases

No. of Exons

54

No. of isoforms

2

Protein Name

Collagen alpha-1(IV) chain

Molecular Mass

160611 Da

Amino Acid Count

1669

Genomic Location

chr13:110,148,962-110,307,156

Gene Map Locus
13q34

Description

This gene encodes a type IV collagen alpha protein. Type IV collagen proteins are integral components of basement membranes. This gene shares a bidirectional promoter with a paralogous gene on the opposite strand. The protein consists of an amino-terminal 7S domain, a triple-helix forming collagenous domain, and a carboxy-terminal non-collagenous domain. It functions as part of a heterotrimer and interacts with other extracellular matrix components such as perlecans, proteoglycans, and laminins. In addition, proteolytic cleavage of the non-collagenous carboxy-terminal domain results in a biologically active fragment known as arresten, which has anti-angiogenic and tumor suppressor properties. Mutations in this gene cause porencephaly, cerebrovascular disease, and renal and muscular defects. Alternative splicing results in multiple transcript variants. [From RefSeq]

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_001845.5:c.3880_3881delUnited Arab EmiratesNC_000013.11:g.110167227_110167228delLikely PathogenicBrain Small Vessel Disease 1 with or without Ocular AnomaliesNG_011544.2:g.144923_144924del; NM_001845.5:c.3880_3881del; NP_001836.3:p.Ile1294TrpfsTer10
NM_001845.6:c.4888dupSaudi ArabiaNC_000013.11:g.110152374dupNG_011544.2:g.159776dup; NM_001845.6:c.4888dup; NP_001836.3:p.(Ser1630LysfsTer77)
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