Major Histocompatibility Complex, Class I, B

Alternative Names

  • HLA-B
  • HLA-B Histocompatibility Type
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OMIM Number




Uniprot ID



87,722 bases

No. of Exons


Protein Name

HLA class I histocompatibility antigen, B alpha chain

Molecular Mass

40460 Da

Amino Acid Count


Genomic Location


Gene Map Locus


The genes of the Human Leukocyte Antigen (HLA) system are located on chromosome 6, and code for cell-surface proteins that play a crucial role in the presentation of endogenic peptides to effector cells of the immune system. The HLA Class I protein molecule is a heterodimer, made up of two chains: a heavy one and a light one (beta 2 microglobulin). The HLA-B gene is one of the three HLA Class I heavy chain paralogues. The HLA Class I protein presents peptides from the lumen of the endoplasmic reticulum to T-cells, thereby effecting a cascade of immunologic reactions.

Variations or polymorphisms in the HLA-B locus are associated with several disease conditions, including psoriasis, Crohn's Disease, reactive arthritis and spondyloarthropathies, like ankylosing spondylitis (AS). HLA-B27 is estimated to account for 20-50% of AS genetic risk with variable contribution in different population groups. There are many theories regarding the role of HLA-B27 in triggering AS. The most popular theory is that the initial inflammation is due to the activation of the body's immune system by a bacterial infection. The immune response is then directed against the HLA-B27 itself, due to epitopic similarities.

Certain HLA-B alleles also tend to react adversely to certain drugs. For instance, individuals with the HLA-B*1502 allele are highly susceptible to developing Steven Johnson syndrome, when administered carbamazepine. Similarly, individuals with HIV, who carry the HLA-B*5701 allele, are known to be highly sensitive to the drug Abcavir, used to treat AIDS. Another point of interest with regards to the HLA-B locus is the resistance afforded by HLA-B53 allele to malaria. This is evidenced by the high frequency of this allele in the West African populations.

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinical SignificanceCondition(s)HGVS ExpressionsdbSNPClinvar
NM_005514.7:c.97T>CSaudi Arabiachr6:31356934Risk factorBehçet SyndromeNG_023187.1:g.5279T>C; NM_005514.7:c.97T>C; NP_005505.2:p.Tyr33Asn

Other Reports


Sánchez-Velasco et al. (2001) studied major histocompatibility complex (MHC) class I and class II alleles in 100 unrelated adult Jordanians of both sexes from the capital Amman and in 46 individuals from the Jordan valley. Sánchez-Velasco et al. (2001) detected 46 alleles for the HLA-B locus in the Jordanian population, indicating the existence of many polymorphisms in this area. HLA-B*0713 (0.1724), B*3527 (0.0827), and B*5101 (0.0655) were found to be the most frequent in the Jordanian population. In addition, 220 different five-loci haplotypes with several unusual allelic combinations were observed, although many of them are pan-European haplotypes. The most frequent five-loci haplotype was found to be the A30-B7-DRB1*03-DQA1*0501-DQB1*0201 (0.0138). Since several Jordanian haplotypes were not found in the literature at the time, Sánchez-Velasco et al. (2001) suggested that the specific Jordanian haplotypes include A31-B7-DRB1*04/07-DQA1*0301/0201-DQB1*0302/0202 haplotype (0.0103) and the A1-B7-DRB1*07-DQA1*0201-DQB1*0202, A2-B7-DRB1*04-DQA1*0301-DQB1*0302, A11-B7-DRB1*07-DQA1*0201-DQB1*0201 haplotypes but at lower frequencies (0.007). Sánchez-Velasco et al. (2001) made a tree analysis of HLA class I and class II alleles for several Caucasian populations and calculated individual genetic distances. Haplotype frequencies, genetic distances, and dendrograms did not reveal great differences as compared with those in other Mediterranean countries and Western Europeans populations. These results led Sánchez-Velasco et al. (2001) to suggest that both HLA class I and class II polymorphisms (but especially the former) of the Jordanian population demonstrate considerable heterogeneity, which reflects ancient and recent admixture with neighboring populations, and important human migratory trends throughout the history.


Mahmoud (1998) compared the expression frequencies of the major histocompatibilty complex (MHC) in 26 Kuwaiti psoriatic patients with 60 controls matched for age, sex, and ethnic origin. The study revealed significantly decreased expression of HLA-B7 in the cases versus the controls.


Allele frequencies of HLA -B alleles were studied in the Lebanese population by Cano et al (2012).  

Khansa et al. (2013) conducted a study to investigate the distribution of HLA-A, -B and -C alleles in Lebanon. HLA typing for class I A, B, and C alleles were carried out in a group of 1994, 1309, and 1163 potential donors (bone marrow/kidney), respectively. The study identified A*02:01, B*35:01, and C*04:01 as the most common class I alleles among these unrelated subjects, from different parts of Lebanon.


Agarwal et al. (1996) compared the frequencies of HLA-B antigens in 50 Omani patients diagnosed with Idiopathic Dilated Cardiomyopathy, with those of 247 healthy Omani control subjects. Data obtained was statistically analyzed by chi square test or the Fisher exact test (where appropriate) with the Bonferroni correction obtained by multiplying the P value by the numbers of antigens tested to correct the P value for any chance associations (PC). The antigens tested for included HLA-B 5, 7, 8, 12, 13, 14, 15, 16, 17, 18, 21, 22, 27, 35, 40, 41, 42, 47, 49, 53, 55, 57, w4, and w6. None of these antigens showed a significant difference in frequency between the patient and control group. Earlier studies performed in other populations had indicated HLA-B7 and B14 to be connected to dilated cardiomyopathy. However, Agarwal et al. (1996) could not find any such correlation in this study.

White et al. (1999) determined the frequencies of histocompatibility antigens (HLA A and B) in 321 healthy Omani blood, kidney and bone marrow donors (who were not related to each other) by HLA serology. In locus B, 34 serological specificities were determined. The results which were expressed in percentages were statistically compared with those of other gulf countries. It was found that HLA-B17 (21%), B35 (30%), and B40 (15%) were significantly more frequent in Oman than in Saudi Arabia and Kuwait, while HLA-B21 (8%), B27 (0.3%- not significant) and B50 (2%) were significantly lower in Oman than in the other two countries.

Williams et al. (2000) reported a novel allele detected in two Omani individuals in a research undertaken to identify the allele frequencies in 118 healthy Omani subjects. DNA analysis of the subjects was undertaken by PCR amplification followed by analysis by sequence specific oligonucleotide probes (SSOP) in two steps which included typing by a medium-resolution HLA-B PCR-SSOP followed by allele typing by high-resolution SSOP systems according to the HLA-B result. A novel allele was detected under the family HLA-B*39 and was identified in two unrelated subjects who were from different tribes. It differed from HLA-B*39011 and HLA-B*3903 only at the start of exon 3 between positions 12 and 30. Further studies were performed by PCR amplification of exons 2 and 3 from the subjects, followed by purification and sequencing. The exon 2 and 3 alignments of HLA-B*39 variant (HLA-B*3921) were compared with HLA-B*3901, -B*3903, -B*39061 and -B*3910 and it showed similarity to HLA-B*3903 with one nucleotide change at 22 (T-to-C) in exon 3, resulting in methionine to threonine change at amino acid position 98. In both individuals, a positive hybridization signal was detected upon hybridization of a constructed oligonucleotide probe to HLA-B PCR products, confirming the existence of this cytosine mutation. The lack of this mutation in all other HLA-B alleles, and the absence of detection of HLA-B*3903 allele in the Omani population, suggested that the variant allele may have arisen from a conversion event and a point mutation from HLA-B*39061.

Williams et al. (2001) used a two-stage sequence specific oligonucleotide probe (SSOP) typing method to determine the HLA-B allele frequencies in six populations of different ethnic and geographical locations, which included 118 unrelated, healthy Omani subjects, representing the normal population of Oman. DNA of the subjects was amplified by PCR and medium resolution HLA-B SSOP analysis was done, which was followed by typing the samples to allele level using a secondary SSOP systems depending on the initial results obtained from the first stage system. The PCR products were dot blotted, hybridized with digoxigenin probes and detected with chemiluminescence procedures. Population genetic analysis were performed, which included the validity of Hardy-Weinberg equilibrium and analysis of homozygosity (both assessed by Pearson's chi square test which showed a good fit to that expected for all populations), gene frequency estimates and HLA-A/B haplotype frequencies (derived from maximum likelihood analysis) as well as linkage disequilibrium parameters. In all populations a total of 87 (38%) alleles were detected in this study. Some allele families had one or more variants within a population, and when one allele was predominant in frequency in most of the populations (HLA-B*3501 and -B*4403), it would represent the ancestral allele. In none of the studied populations was the allele family HLA-B*59 expressed. Among the Omani population, a total of 38 alleles were identified with HLA-B*5101 being the predominant one with a frequency of 17.5%. The least represented alleles had frequencies of 0.4% and were HLA-B*705/06, -B*1401, -B*1513, -B*1516, -B*1517, -B*2702, -B*3503, -B*3701, -B*3801, -B*3910, -B*4415, -B*4701, and HLA-B*5703. In this study, two novel HLA-B alleles were detected. The first of these, HLA-B*3924, was found within the Omani population and was expressed in two individuals. In another Omani subject, an allele, HLA-B*4415, which was previously identified in one occasion, was identified. Identical typing patterns of HLA-B*0705 and -B*0706 were observed within the designed typing system which led to unresolved heterogeneous assignments in three types. These indistinguishable types were HLA-B*1402 and -B*1404 in one subject, -B*5301 and -B*7802 in six, and HLA-B*3521 and -B*5105 in one subject. In this population, unique alleles, HLA-B*4006 (8.4%) and -B*7301 (0.8%) were identified, with the HLA-B*4006 being the only allele from the HLA-B*40 family identified among the Omani population. Analysis of HLA-A/B haplotypes revealed four significant ones among the Omani population, HLA-A*1101 and -B*4006, HLA-A*3002 and -B*1402, HLA-A*3101 and -B*3906, and HLA-A*3301 and -B*8101. Williams et al. (2001) explained the importance of haplotype frequency data in distinguishing populations with similar allele frequencies but different haplotype.

Saudi Arabia

In a study comparing the HLA-B phenotypes among 109 Saudi Arabian males with Caucasian subjects, Ollier et al. (1985) found that the HLA-Bw50 was seen in a very high frequency among the Saudi subjects.

In a study of the HLA gene and antigen frequency among Saudi Arabian subjects, Sheth et al. (1985) discovered that the B21 antigen showed the highest gene frequency (14.6%) among all Middle Eastern populations. The various different HLA-B antigens showed the following gene frequencies: B5 (18.5%), B21 (14.6%), and B35 (10.2%). These frequencies were similar to those observed in the Yemenite population, prompting Sheth et al. (1985) to suggest an influence of such other populations on the Saudi Arabian population.

Abanmi et al. (2006) investigated the HLA loci antigens and alleles in a group of 40 unrelated Saudi patients with vitiligo (18 males, 22 females) and compared the results to that in a group of 40 matched controls. The most frequent HLA-B antigens among the patient group were Bw6, Bw4, and B5. The statistically significant difference between HLA-B antigens among the disease and control groups were the frequencies of HLA-B7, B15, and Bw6, which were found to be increased in vitiligo patients, and B5, which was found to be decreased.

Hajeer et al. (2009) reported on the association of HLA classes I and II with Myasthenia Gravis (MG) in the Saudi population. One hundred and nine Saudi patients with MG (73 females and 36 males) were included in the study. The control group comprised 383 healthy individuals from the same ethnicity. Typing HLA for the two groups revealed a strong association in the case of HLA-B*08, and MG patients carrying the latter allele are mostly females with young age at onset. On the other hand, the results indicated that the most frequent allele in the Saudi population; HLA-B*50 has a protective effect in the context of MG. The frequency of HLA-B*50 in the control group reached 19%. Interestingly, the latter allele is absent or rarely found in other populations.


Harfouch and Al-Cheikh (2011) assessed the HLA-B27 allele and its subtypes associated with ankylosing spondylitis (AS) in 50 Syrian patients and 217 unrelated healthy Syrian controls. HLA-B27 allele was found in 1.4% healthy Syrians and 60% in patients with AS (OR=107, p=0.0001, corrected p=0.003). The most common HLA-B27 variants in patients were B2705, which was found in 67% of patients, followed by B2702 found in 20% of patients. HLA-B27 was identified in all cases with uveitis, peripheral arthritis, and positive family history.

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